Cambridge website for Synthetic Biology resources

www.synbio.org.uk

Compiled by Jim Haseloff at the University of Cambridge. SpannerPlantLogo140This site contains details of recent papers and activity in Synthetic Biology, with particular emphasis on: (i) development of standards in biology and DNA parts, (ii) microbial and (iii) plant systems, (iv) research and teaching in the field at the University of Cambridge, (v) hardware for scientific computing and instrumentation, (vi) tools for scientific productivity and collected miscellany.

Similar to the Cambridge-based Raspberry Pi and OpenLabTools initiatives, we promote the use of low cost and open source tools - in our case for use in biological engineering.

Google: Synthetic Biology news

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Report: Apple to return to Nvidia for Mac Pro graphics in Nehalem update

It looks like Apple could (again) select the graphics giant Nvidia as the primary GPU provider for the upcoming Mac Pro hardware refresh. According to a mostly speculative story by MIC Gadget based on unnamed industry sources, new Mac Pros will feature Intel’s upcoming Ivy Bridge chipset fabbed on the chip maker’s latest 22-nanometer Trigate transistor technology (no surprise there). According to Intel, 22nm Ivy Bridge silicon claims a 37 percent speed jump and lower power consumption compared to the chip giant’s 32 nanometer planar transistors. ‘Trigate’ Ivy Bridge chips can feature up to eight processing cores and are more power-savvy, so they should help scale frequency, too. On a more interesting note, MIC Gadget speculates Apple could switch back to Nvidia as the primary supplier of next-generation GPUs for the new Mac Pros.

Nvidia has their “Kepler” platform due out around the same time as Intel is making their changes, and our sources within the company indicate that they have chosen to have Nvidia lead the charge so to speak on the graphics front.

Eagle-eyed readers could mention that AMD recently released the Radeon HD 7970 graphics card powered by the Tahiti GPU (its nearest rival is Nvidia’s GeForce GTX 590), with observes deeming it Apple’s go-to graphics card for future Mac Pros. Indeed, traces of support for Tahiti-driven AMD GPUs are found in Mac OS X Lion 10.7.3, at least indicating people might be able to upgrade their future Mac Pro with this card. Oh, and it’s great for Hackintosh builders, too.

Also indicative is a March 2011 Snow Leopard 10.6.7 update that enabled support for a bunch of AMD/ATI Radeon HD 5xxx and 6xxx cards, not all of which were in Macs at the time. On the other hand, a speculative switch to Nvidia would not be out of character as California-based Apple is known for frequently switching between Nvidia chips and those manufactured by rival AMD…

While the current-generation Mac Pros feature ATI’s discreet Radeon HD 5770 card with 1GB of GDDR5 memory for up to five times faster standard graphics, early-2oo9 machines used Nvidia’s GeForce GT 120 chips with an optional ATI Radeon upgrade. A mid-2010 refresh dropped Nvidia entirely in favor of AMD GPUs, but no optional Nvidia upgrade was available. The return of Nvidia hardware should benefit users of heavy-duty programs like Adobe Creative Suite that supports Nvidia-accelerated graphics engine for faster processing of media assets, such as audio, images and video. CUDA, Nvidia’s computing engine used in its GPUs has direct support in select apps, but it does not system-wide in Mac OS X. Instead, Apple’s desktop operating system supports a cross-platform GPGPU standard called OpenCL that Intel, AMD, Nvidia, and ARM adopted. In case you are wondering, Mac Pros are way overdue for a refresh and were last updated on July 27, 2010 —a whopping 567 days ago.

Report: Apple to return to Nvidia for Mac Pro graphics in Nehalem update
(Via 9 to 5 Mac.)

Research news at Cambridge University

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European Association of Students & Postdocs in Synthetic Biology (EUSynBioS)

EUSynBioSprelimLogo240The European Association of Students & Postdocs in Synthetic Biology (EUSynBioS) invites you to join its pre-launch community. The EUSynBioS initiative seeks to shape and foster a network of young researchers active the nascent scientific discipline of synthetic biology within the European Union by means of providing an integrative central resource for interaction and professional development.

Key objectives of EUSynBioS include i) the implementation of a central web platform for sharing news and opportunities relevant to members of the community as well as for academic networking, ii) the arrangement and support of events for academic exchange and professional development, iii) liaison with representatives of industry, and iv) establishment of a primary contact for collaboration and exchange with related communities of synthetic biology students and postdocs abroad.

Registering as a member is free and can be completed within 30 seconds via the following link http://www.eusynbios.org/students-and-postdocs/join Students and postdocs who register as a EUSynBioS member will be able to:
o Access a large network of young researchers in synthetic biology for academic collaboration and exchange
o Share technical resources and teaching materials
o Stay informed about relevant events such as conferences, workshops, or social outings o Browse relevant jobs in academia and industry
o Use site visits and mentoring opportunities to interact with prospective employers
o Connect with members of related communities all over the world

By registering as a member prior to the official launch of EUSynBioS, you will not only make a statement of support which will have an impact on the resources available to the community in the future; you will also be given the chance to actively shape EUSynBioS right from the start, and have an edge when applying for a position on the Steering Committee. We are looking forward to your joining us ! Christian Boehm, University of Cambridge.