Links to Scientific Software
http://nebc.nerc.ac.uk/nebc/tools/bio-linux
Bio-Linux is a fully featured, powerful, configurable and easy to maintain bioinformatics workstation. Bio-Linux provides more than 500 bioinformatics programs on an Ubuntu Linux base. There is a graphical menu for bioinformatics programs, as well...
| 164 hits | Read more
http://www.cellprofiler.org
CellProfiler is free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. CellProfiler Analyst is another free open-source...
| 272 hits | Read more
http://openclnews.com
Site with the latest news about OpenCL - for cross-platform support of GPGPU acceleration. Also includes links to resources and list of applications that exploit OpenCL
| 200 hits
http://natureofcode.com
Capturing the unpredictable evolutionary and emergent properties of nature in software using Processing. Website for a book that focuses on the programming strategies and techniques behind computer simulations of natural systems using Processing.
| 238 hits
http://www.learningprocessing.com
Daniel Shiffman's start-up guide to Processing, the visual artist’s free, open-source alternative to expensive software and daunting programming languages. Step-by-step examples, thorough explanations, hands-on exercises, and simple code samples...
| 392 hits | Read more
http://www.openprocessing.org
A website to share Processing sketches with others, help and collaborate with the community, improve and polish programming skills and follow classes around the world that teach Processing.
| 664 hits
http://processing.org/
Processing is an open source programming language and environment for people who want to create images, animations, and interactions. Initially developed to serve as a software sketchbook and to teach fundamentals of computer programming within a...
| 797 hits | Read more
http://www.openframeworks.cc
openFrameworks is an open source C++ toolkit designed to assist the creative process by providing a simple and intuitive framework for experimentation. The toolkit is designed to work as a general purpose glue, and wraps together several commonly...
| 873 hits | Read more
http://www.colocalizer.com/
CoLocalizer Pro is a quantitative colocalization analysis software. It is used for estimating the degree of colocalization signals in images obtained using confocal microscopes.
| 2203 hits
http://penglab.janelia.org/proj/v3d/V3D/About_V3D.html
V3D is a cross-platform (Mac, Linux, and Windows) tool for visualizing large-scale (gigabytes, and 64-bit data) 3D image stacks and various surface data. It is also a container of powerful modules for 3D image analysis (cell segmentation, neuron...
| 2395 hits | Read more
http://www.macnification.com/
Macnification is OS X software for handling microscopic image data: including JEOL tiff and Zeiss LSM formats, and others and image metadata.
| 2201 hits
http://www.thirdstreetsoftware.com/
Sente is an academic reference manager, which can help find, organize, review and cite the academic literature in your field. Sente helps build and maintain a library of PDF files for these references, and format bibliographies.
| 2124 hits
http://www.wolfram.com/
Mathematica-software environment for computation modeling, simulation, visualization, development, documentation, and deployment.
| 1985 hits
http://www.osirix-viewer.com/
OsiriX is an open source image processing program dedicated to DICOM images produced by imaging equipment and confocal microscopy (LSM and BioRAD-PIC format).
| 2050 hits
http://www.pure-mac.com/
Pure Mac - site with a comprehensive index of Mac OS X software
| 2158 hits
http://www.gimp.org/macintosh/
GIMP is an acronym for GNU Image Manipulation Program. It is a freely distributed program for such tasks as photo retouching, image composition and image authoring.
| 2034 hits
http://www.itk.org/
National Library of Medicine Insight Segmentation and Registration Toolkit (ITK), an open-source software system with leading-edge segmentation and registration algorithms in two, three, and more dimensions.
| 2105 hits


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Raspi Colour 200

 

www.raspberrypi.org

The Raspberry Pi is a credit-card-sized single-board computer developed in Cambridge by the Raspberry Pi Foundation with the intention of promoting the teaching of basic computer science in schools. The low cost hardware is finding a myriad of additional applications, including scientific applications.
 

Makespace200

makespace.org

Makespace is a community workshop in Cambridge for making things, meeting people, working on projects and learning new things.